Stem-loop cfa-mir-8908a-1

Accession

MI0028030

Description

Canis lupus familiaris cfa-mir-8908a-1 precursor miRNA

Sequence

20199 reads, 91.0 reads per million, 62 experiments

cccugaacaacauccgucuucccgggugaugugugcagugcucUGCUGAGGAAGGUGCUCAUUGCauucauucauaagaguAAUUAGGACCUCCCUGAGCGGAguaaugcucaccugaaggacgucugcguugucuuacggagcg
((.((((((((.(.((((((..(((((((.....(((.(((((((((.(((.((((.((.(((((..((........))))))).)).)))).))).))))))))).)))))))))).))))))...).))))).))).))....

Structure

----  c   -     a --c      cc       ugugu   g         G   A    G  C     au  auu 
    cc uga acaac u   cgucuu  cggguga     gca ugcucUGCU AGG AGGU CU AUUGC  uc   c
    || ||| ||||| |   ||||||  |||||||     ||| ||||||||| ||| |||| || |||||  ||    
    gg auu uguug g   gcagga  guccacu     cgu augAGGCGA UCC UCCA GA UAAug  ag   a
gcga  c   c     c ucu      -a       -----   a         G   C    G  U     --  aau 

Annotation confidence High

Genome context

X: 116731906-116732050 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from cfa-mir-8908a-1

Mature cfa-miR-8908a-5p

• Accession: MIMAT0034428
• Description: Canis lupus familiaris cfa-miR-8908a-5p mature miRNA
• Sequence: 44 - UGCUGAGGAAGGUGCUCAUUGC - 65
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8908a-3p

• Accession: MIMAT0034429
• Description: Canis lupus familiaris cfa-miR-8908a-3p mature miRNA
• Sequence: 82 - AAUUAGGACCUCCCUGAGCGGA - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545