Stem-loop cfa-mir-8908d-1

Accession

MI0028036

Description

Canis lupus familiaris cfa-mir-8908d-1 precursor miRNA

Sequence

4726 reads, 24.0 reads per million, 45 experiments

cuggccagauccucuccugcgggccacgcugaguuuagggccCUACCCAGAAAGGUGCUGAUGAggcaggauacagauuaUUAGCGCCUGACUGAGUGGGGUcccaaucaguaacagaacugcccguggcguccuucagcuca
..(((..((....(.((.((((((...(((((.....(((((((((.(((..((((((((((((....(....)...))))))))))))..))).)))))))))...))))).........)))))))).)....)).)))..

Structure

cu   ca  uccu u  u      ------cac     guuua         C   AA            ggca g 
  ggc  ga    c cc gcgggc         gcuga     gggccCUAC CAG  AGGUGCUGAUGA    g a
  |||  ||    | || ||||||         |||||     ||||||||| |||  ||||||||||||    |  
  ucg  cu    g gg ugcccg         ugacu     ccUGGGGUG GUC  UCCGCGAUUauu    c u
ac   -a  uccu c  -      ucaagacaa     --aac         A   AG            -aga a 

Annotation confidence High

Genome context

X: 116736687-116736829 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from cfa-mir-8908d-1

Mature cfa-miR-8908d-5p

• Accession: MIMAT0052007
• Description: Canis lupus familiaris cfa-miR-8908d-5p mature miRNA
• Sequence: 43 - CUACCCAGAAAGGUGCUGAUGA - 64
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8908d-3p

• Accession: MIMAT0034420
• Description: Canis lupus familiaris cfa-miR-8908d-3p mature miRNA
• Sequence: 81 - UUAGCGCCUGACUGAGUGGGGU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545