Stem-loop cfa-mir-8908c

Accession

MI0028037

Description

Canis lupus familiaris cfa-mir-8908c precursor miRNA

Sequence

1354 reads, 24.0 reads per million, 35 experiments

ugugugcagugcccUGCUCAGGAUGGCGCUGAUUACauacucuaggaguGAUUAGCAUCUGCCUGGGCCGAgugaugcucacu
.(((.(((..((.(.(((((((..((.(((((((((...........))))))))).))..))))))).).))..))).))).

Structure

u   u   gu  c U       AU  C         auac 
 gug gca  gc c GCUCAGG  GG GCUGAUUAC    u
 ||| |||  || | |||||||  || |||||||||    c
 cac cgu  ug G CGGGUCC  CU CGAUUAGug    u
u   u   ag  A C       GU  A         agga 

Annotation confidence High

Genome context

X: 116696694-116696776 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-8908c

Mature cfa-miR-8908c-5p

• Accession: MIMAT0052014
• Description: Canis lupus familiaris cfa-miR-8908c-5p mature miRNA
• Sequence: 15 - UGCUCAGGAUGGCGCUGAUUAC - 36
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8908c-3p

• Accession: MIMAT0034433
• Description: Canis lupus familiaris cfa-miR-8908c-3p mature miRNA
• Sequence: 50 - GAUUAGCAUCUGCCUGGGCCGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545