Stem-loop cfa-mir-8908a-3

Accession

MI0028038

Description

Canis lupus familiaris cfa-mir-8908a-3 precursor miRNA

Sequence

20216 reads, 90.0 reads per million, 63 experiments

cccugaacaauauccgucuucccgcguaacguguguagugcucUGCUGAGGAAGGUGCUCAUUGCauucauucauaagaguAAUUAGGACCUCCCUGAGCGGAguaaugcucaccugaaguacgucugcggugucuucuggagcg
.((.(((..(((.((((......(((((..(((.(((.(((((((((.(((.((((.((.(((((..((........))))))).)).)))).))).))))))))).))).)))......)))))..))))))).))).))....

Structure

---c  u   ca   u    cuuccc     ----ac   u   g         G   A    G  C     au  auu 
    cc gaa  aua ccgu      gcgua      gug gua ugcucUGCU AGG AGGU CU AUUGC  uc   c
    || |||  ||| ||||      |||||      ||| ||| ||||||||| ||| |||| || |||||  ||    
    gg cuu  ugu ggcg      ugcau      cac cgu augAGGCGA UCC UCCA GA UAAug  ag   a
gcga  u   -c   -    ----uc     gaaguc   u   a         G   C    G  U     --  aau 

Annotation confidence High

Genome context

X: 116737623-116737767 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from cfa-mir-8908a-3

Mature cfa-miR-8908a-5p

• Accession: MIMAT0034428
• Description: Canis lupus familiaris cfa-miR-8908a-5p mature miRNA
• Sequence: 44 - UGCUGAGGAAGGUGCUCAUUGC - 65
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8908a-3p

• Accession: MIMAT0034429
• Description: Canis lupus familiaris cfa-miR-8908a-3p mature miRNA
• Sequence: 82 - AAUUAGGACCUCCCUGAGCGGA - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545