Stem-loop cfa-mir-8908a-4

Accession

MI0028039

Description

Canis lupus familiaris cfa-mir-8908a-4 precursor miRNA

Sequence

20205 reads, 91.0 reads per million, 62 experiments

uggacaacauccgucuucccacauacugugugcagugcucUGCUGAGGAAGGUGCUCAUUGCauucauuuauaagaguAAUUAGGACCUCCCUGAGCGGAguaaugcucacuuaaaguacgucugcggugucuuccagagcggug
((((..(((.((((......((.(((((((.(((.(((((((((.(((.((((.((.(((((..((........))))))).)).)))).))).))))))))).))).)))....)))).))..)))))))..))))........

Structure

--------    ca   u    cuuccc  a    ----   u   g         G   A    G  C     au  auu 
        ugga  aca ccgu      ac uacu    gug gca ugcucUGCU AGG AGGU CU AUUGC  uc   u
        ||||  ||| ||||      || ||||    ||| ||| ||||||||| ||| |||| || |||||  ||    
        accu  ugu ggcg      ug auga    cac cgu augAGGCGA UCC UCCA GA UAAug  ag   a
guggcgag    uc   -    ----uc  c    aauu   u   a         G   C    G  U     --  aau 

Annotation confidence High

Genome context

X: 116728712-116728856 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from cfa-mir-8908a-4

Mature cfa-miR-8908a-5p

• Accession: MIMAT0034428
• Description: Canis lupus familiaris cfa-miR-8908a-5p mature miRNA
• Sequence: 41 - UGCUGAGGAAGGUGCUCAUUGC - 62
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8908a-3p

• Accession: MIMAT0034429
• Description: Canis lupus familiaris cfa-miR-8908a-3p mature miRNA
• Sequence: 79 - AAUUAGGACCUCCCUGAGCGGA - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545