Stem-loop cfa-mir-8906

Accession

MI0028041

Description

Canis familiaris cfa-mir-8906 precursor miRNA

Sequence

ccgcauggugaggcgcgugugccucugggacccccUCCUCUGCAUUUGGCUGGGACGGCAuuuuuucaucccuggccgucccgggcauugucgggauggcguuaguggggcgggaggaaauacgcuuugucgcgu
.......((((.(.((((((.(((((.(..((((((((((((((..((.((((((((((...............)))))))))).)).)))..))).))....)).))))).)))))..))))))..).))))..

Structure

ccgcaug    g -c      -g     g ga    -  ----  -   --   UU  G          Auuuuu 
       guga g  gcgugu  ccucu g  cccc cU    CC UCU  GCA  UG CUGGGACGGC      u
       |||| |  ||||||  ||||| |  |||| ||    || |||  |||  || ||||||||||      c
       cgcu u  cgcaua  ggagg c  gggg ga    gg agg  ugu  ac ggcccugccg      a
-----ug    g uu      aa     g --    u  uugc  u   gc   -u  g          gucccu 

Annotation confidence Not enough data

Genome context

chr16: 13916150-13916284 [+]

Mature cfa-miR-8906

• Accession: MIMAT0034434
• Description: Canis familiaris cfa-miR-8906 mature miRNA
• Sequence: 36 - UCCUCUGCAUUUGGCUGGGACGGCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545