Stem-loop cfa-mir-8905

Accession

MI0028043

Description

Canis lupus familiaris cfa-mir-8905 precursor miRNA

Sequence

132 reads, 14.0 reads per million, 8 experiments

ugucucucucuggccguccggggcgacgagagaacuaccaUCCACAAAGAGGAUUCGGUCAGGCUucgggagggcuugauaggaaagUCCCGACGUGGAGGAGUCAGCUcgugcaggaguugagggcaggaaugggaggguucug
(((((((((((.(((......))).).))))))(((.((.(((((...(.((((((.(((((((((.....)))))))))..))..)))))...))))))))))((((((......))))))..))))(((((......))))).

Structure

-----------------    ucucucuggccguccggggcgacgagaga   a  a     AAA A    --  -G         c 
                 uguc                             acu cc UCCAC   G GGAU  UC  GUCAGGCUu g
                 ||||                             ||| || |||||   | ||||  ||  ||||||||| g
                 acgg                             UGA GG AGGUG   C CCUg  ag  uaguucggg g
gucuugggaggguaagg    ---------gaguugaggacgugcUCGAC   -  -     CAG -    aa  ga         a 

Annotation confidence Low

Genome context

26: 30328846-30328990 [+]

Mature cfa-miR-8905-5p

• Accession: MIMAT0034436
• Description: Canis lupus familiaris cfa-miR-8905-5p mature miRNA
• Sequence: 41 - UCCACAAAGAGGAUUCGGUCAGGCU - 65
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8905-3p

• Accession: MIMAT0052015
• Description: Canis lupus familiaris cfa-miR-8905-3p mature miRNA
• Sequence: 88 - UCCCGACGUGGAGGAGUCAGCU - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545