Stem-loop eca-mir-8909

Accession

MI0028044

Description

Equus caballus eca-mir-8909 precursor miRNA

Sequence

15789 reads, 474.0 reads per million, 14 experiments

aaaucucacgcuccaCCUGAAAUUCUGAUGCACCUCUCaggucgggggggagaccuccccaccgcgUGACGAGGCACCAUGAUGCUCAGGA
...............(((((.(((.((.(((..((((((.(.(((.(((((....))))).)))).))).)))))).)).)))..))))).

Structure

aaaucucacgcucca     -A   C  A   AC   -   g u   g     g 
               CCUGA  AUU UG UGC  CUC UCa g cgg gggga a
               |||||  ||| || |||  ||| ||| | ||| |||||  
               GGACU  UAG AC ACG  GAG AGU c gcc ccccu c
--------------A     CG   U  C   --   C   g -   a     c 

Annotation confidence Medium

Genome context

20: 35120531-35120621 [+]

Mature eca-miR-8909-5p

• Accession: MIMAT0034437
• Description: Equus caballus eca-miR-8909-5p mature miRNA
• Sequence: 16 - CCUGAAAUUCUGAUGCACCUCUC - 38
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8909-3p

• Accession: MIMAT0051501
• Description: Equus caballus eca-miR-8909-3p mature miRNA
• Sequence: 67 - UGACGAGGCACCAUGAUGCUCAGGA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545