Stem-loop eca-mir-8920

Accession

MI0028055

Description

Equus caballus eca-mir-8920 precursor miRNA

Sequence

901 reads, 12.0 reads per million, 120 experiments

cugcccccgccgucaccuucucgcuacgcgAGCCGGGCUCCCGGGGACCCGgcgggccuccgUUUCCCCGCGGGCCCGGGCUCUuggcgcggaagcggcgccccgagcg
..(((..(((((....((((((((((...(((((((((((.((((((...(((((....))))))))))).)))))).))))).))))).))))))))))....).)).

Structure

cu  - --cc     ucac     -     cgc     -      C      CCC     g 
  gc c    cgccg    cuucu cgcua   gAGCC GGGCUC CGGGGA   Ggcgg c
  || |    |||||    ||||| |||||   ||||| |||||| ||||||   |||||  
  cg g    gcggc    gaagg gcggu   CUCGG CCCGGG GCCCCU   UUgcc c
-g  a cccc     ----     c     --U     G      C      ---     u 

Annotation confidence Medium

Genome context

9: 30090623-30090731 [-]

Mature eca-miR-8920-5p

• Accession: MIMAT0051503
• Description: Equus caballus eca-miR-8920-5p mature miRNA
• Sequence: 31 - AGCCGGGCUCCCGGGGACCCG - 51
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8920-3p

• Accession: MIMAT0034448
• Description: Equus caballus eca-miR-8920-3p mature miRNA
• Sequence: 63 - UUUCCCCGCGGGCCCGGGCUCU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545