Stem-loop eca-mir-8922

Accession

MI0028057

Description

Equus caballus eca-mir-8922 precursor miRNA

Sequence

327 reads, 9.0 reads per million, 80 experiments

augcgcggcaagCUGCCACUUUGACCCACUguagcgggcggccgccugagugggcuugggucccccagggCUGAGCAGCUCGGCGGGCUGCCACUuugaccaacucuggcggugggccgccagug
.((.(((((..(((((((..(((...((..((.((((.(.((((.(((..(((.((((((...)))))).)))..)))..)))).).)))).))..))..)))...)))))))..)))))))...

Structure

--a  c     aa       -CU   ACC  CU  a    g g    -c   ag   g      u 
   ug gcggc  gCUGCCA   UUG   CA  gu gcgg c gccg  cug  ugg cuuggg  
   || |||||  |||||||   |||   ||  || |||| | ||||  |||  ||| |||||| c
   ac cgccg  uggcggu   aac   gu  CA CGUC G CGGC  GAC  GUC ggaccc  
gug  -     gg       cuc   -ca  uU  C    G G    UC   GA   g      c 

Annotation confidence Medium

Genome context

gb|PJAA01003099.1|: 4499-4621 [+]

Mature eca-miR-8922-5p

• Accession: MIMAT0051504
• Description: Equus caballus eca-miR-8922-5p mature miRNA
• Sequence: 13 - CUGCCACUUUGACCCACU - 30
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8922-3p

• Accession: MIMAT0034450
• Description: Equus caballus eca-miR-8922-3p mature miRNA
• Sequence: 71 - CUGAGCAGCUCGGCGGGCUGCCACU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545