Stem-loop eca-mir-8923-1

Accession

MI0028058

Description

Equus caballus eca-mir-8923-1 precursor miRNA

Sequence

34 reads, 5 reads per million, 1 experiments

aggaccuggcacuugggcuggggcugcugaUGGCACUCGCUCGGGGUCUGGAGCAgcugagggcgcugcugccgguuccagcgcuagaagugauggcagaaauagaacuggaguuccguccagcu
....((((((......))))))((((..(((((.(((((((.((((.((((((((((.......)))))).)))))))))))((((.......)))).............)))).))))))))).

Structure

aggaccuggcacuugggcuggg    cu     C    ----------------------------   C    U    -      ug 
                      gcug  gaUGG ACUC                            GCU GGGG CUGG AGCAgc  a
                      ||||  ||||| ||||                            ||| |||| |||| ||||||  g
                      cgac  cugcc ugag                            cga ccuu ggcc ucgucg  g
---------------------u    --     u    gucaagauaaagacgguagugaagaucg   -    -    g      cg 

Annotation confidence Not enough data

Genome context

chr15: 3406972-3407096 [+]

Mature eca-miR-8923

• Accession: MIMAT0034451
• Description: Equus caballus eca-miR-8923 mature miRNA
• Sequence: 31 - UGGCACUCGCUCGGGGUCUGGAGCA - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545