Stem-loop eca-mir-185

Accession

MI0028070

Description

Equus caballus eca-mir-185 precursor miRNA

Literature search

6 open access papers mention eca-mir-185
(10 sentences)

Sequence

452041 reads, 1736.0 reads per million, 222 experiments

cugggcagcgggccuggcucgaguagggggugagggauUGGAGAGAAAGGCAGUUCCUGAugguccccucccCAGGGGCUGGCUUUCCUCUGGUccuuccuucccaaugaccgcgucuucgucaaggcc
...(((....(((..(((.((.((..((((.((((((((((((.(((((.(((((((((..((......)).))))))))).)))))))))))))))))..))))....)))).)))...)))...)))

Structure

cug   agcg   -cu   u  a  --ag    -u            A     G         Au  uc 
   ggc    ggc   ggc cg gu    gggg  gagggauUGGAG GAAAG CAGUUCCUG  gg  c
   |||    |||   ||| || ||    ||||  |||||||||||| ||||| |||||||||  ||   
   ccg    cug   cug gc ca    cccu  cuuccUGGUCUC CUUUC GUCGGGGAC  cc  c
---   -gaa   cuu   c  -  guaa    uc            -     G         -c  uc 

Annotation confidence High

Genome context

8: 326570-326698 [-]

Mature eca-miR-185-5p

• Accession: MIMAT0051506
• Description: Equus caballus eca-miR-185-5p mature miRNA
• Sequence: 39 - UGGAGAGAAAGGCAGUUCCUGA - 60
• Evidence: experimental ; Illumina [1]

Mature eca-miR-185-3p

• Accession: MIMAT0034461
• Description: Equus caballus eca-miR-185-3p mature miRNA
• Sequence: 73 - CAGGGGCUGGCUUUCCUCUGGU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545