Stem-loop eca-mir-8933-1

Accession

MI0028071

Description

Equus caballus eca-mir-8933-1 precursor miRNA

Sequence

8 reads, 1 reads per million, 1 experiments

cugauauucacagguuguugacaacagcggggaguggggaGAGGUCAGGAACGCGGGCACAGGCGagugcuuucuccucuccucgguccuucccccguggacucuuguccugcagcuuccucucccuucuaguugauugccgugg
........(((.(((.((((((...((.((((((.(((((((((.(((((.((((((...(((((((..............))))..)))...))))))...))))).)))....)))))))))))).)).)))))).)))))).

Structure

cugauauu   a   u      aac  c      u      ----   U     --A      CAC   --    ugcuuu 
        cac ggu guugac   ag ggggag ggggaG    AGG CAGGA   CGCGGG   AGG  CGag      c
        ||| ||| ||||||   || |||||| ||||||    ||| |||||   ||||||   |||  ||||       
        gug ccg uaguug   uc ucccuc uccuuc    ucc guucu   gugccc   ucc  gcuc      u
-------g   -   u      --a  u      -      gacg   u     cag      ccu   ug    cucucc 

Annotation confidence Not enough data

Genome context

NW_001867699.1: 130747-130891 [-]

Mature eca-miR-8933

• Accession: MIMAT0034462
• Description: Equus caballus eca-miR-8933 mature miRNA
• Sequence: 41 - GAGGUCAGGAACGCGGGCACAGGCG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545