Stem-loop eca-mir-8941-1

Accession

MI0028085

Description

Equus caballus eca-mir-8941-1 precursor miRNA

Sequence

7785 reads, 146.0 reads per million, 16 experiments

cuggagccugaguagcugcagagggaggugaUGACACUGCAGAGGACUCUGCUGGggaaggcuggcagcacagucUCUGAGAGCCUCUGCAUCAUgccugccuggagggcgcgcauccugcaggccucagugaca
(((.(((.......))).)))(((.((((.((((...((((((((.((((.(...(((.(((((......))))))))))))))))))))))))))))).))).((((.(..(((...))).).)))).......

Structure

-----------cuggagccugaguagcugcag   g    g    CAC        A    G UGG   a     gc 
                                agg aggu aUGA   UGCAGAGG CUCU C   gga ggcug  a
                                ||| |||| ||||   |||||||| |||| |   ||| |||||   
                                ucc uccg UACU   ACGUCUCC GAGA G   UCU cugac  g
acagugacuccggacguccuacgcgcgggagg   g    -    ---        -    - ---   -     ac 

Annotation confidence Medium

Genome context

gb|PJAA01001152.1|: 229-363 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-8941-1

Mature eca-miR-8941-5p

• Accession: MIMAT0051508
• Description: Equus caballus eca-miR-8941-5p mature miRNA
• Sequence: 32 - UGACACUGCAGAGGACUCUGCUGG - 55
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8941-3p

• Accession: MIMAT0034470
• Description: Equus caballus eca-miR-8941-3p mature miRNA
• Sequence: 76 - UCUGAGAGCCUCUGCAUCAU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545