Stem-loop eca-mir-8941-2

Accession

MI0028092

Description

Equus caballus eca-mir-8941-2 precursor miRNA

Sequence

7114 reads, 135.0 reads per million, 16 experiments

gcuggagccugaguagcugcagagggaggugaUGACACUGCAGAGGACUCUGCUGGggaggcuggcagcacagucUCUGAGAGCCUCUGCAUCAUgccugccuggagggcacgcauccugcaggccucagugaca
(((((.(((((((..(((((..(((.((((.((((...((((((((.((((.(...((((((((......))))))))))))))))))))))))))))).))).....))).))...)).))))).)))))....

Structure

----     a     -  -ua  -   ---ag   g    g    CAC        A    G UGG        gc 
    gcugg gccug ag   gc ugc     agg aggu aUGA   UGCAGAGG CUCU C   ggaggcug  a
    ||||| ||||| ||   || |||     ||| |||| ||||   |||||||| |||| |   ||||||||   
    ugacu cggac uc   cg acg     ucc uccg UACU   ACGUCUCC GAGA G   UCUcugac  g
acag     c     g  cua  c   ggagg   g    -    ---        -    - ---        ac 

Annotation confidence Medium

Genome context

gb|PJAA01001152.1|: 228-363 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-8941-2

Mature eca-miR-8941-5p

• Accession: MIMAT0051508
• Description: Equus caballus eca-miR-8941-5p mature miRNA
• Sequence: 33 - UGACACUGCAGAGGACUCUGCUGG - 56
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8941-3p

• Accession: MIMAT0034470
• Description: Equus caballus eca-miR-8941-3p mature miRNA
• Sequence: 76 - UCUGAGAGCCUCUGCAUCAU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545