Stem-loop eca-mir-8946

Accession

MI0028093

Description

Equus caballus eca-mir-8946 precursor miRNA

Sequence

3097 reads, 17.0 reads per million, 141 experiments

gggucagggcuguggugaggcaagagaggcgcccaggacgCCACGUUUCAGGAGGCACUGCUggccccaagagCAGCGCCGCUUGAAGUGUGGUGcccuugcaccucccacuucacccuccccuggcucuagagguggc
(((((((((..(.(((((((...(.((((.((..(((.((((((((((((((.(((.(((((.........))))).))).)))))))))))))).))).)).)))).).))))))))..)))))))))..........

Structure

----------         cu u       caa a    c  cc   a              A   A     ggc 
          gggucaggg  g ggugagg   g gagg gc  agg cgCCACGUUUCAGG GGC CUGCU   c
          |||||||||  | |||||||   | |||| ||  ||| |||||||||||||| ||| |||||   c
          cucgguccc  c ccacuuc   c cucc cg  ucc GUGGUGUGAAGUUC CCG GACga   c
cgguggagau         cu -       --a c    a  -u   c              G   C     gaa 

Annotation confidence High

Genome context

NW_001875797.1: 180911-181049 [-]

Mature eca-miR-8946-5p

• Accession: MIMAT0034475
• Description: Equus caballus eca-miR-8946-5p mature miRNA
• Sequence: 41 - CCACGUUUCAGGAGGCACUGCU - 62
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8946-3p

• Accession: MIMAT0051509
• Description: Equus caballus eca-miR-8946-3p mature miRNA
• Sequence: 74 - CAGCGCCGCUUGAAGUGUGGUG - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545