Stem-loop eca-mir-8950

Accession

MI0028097

Description

Equus caballus eca-mir-8950 precursor miRNA

Sequence

19 reads, 3 reads per million, 1 experiments

uucccggcucuacugaccuuugggugcuugcuuuggguagUGAGAGCUCUCAUUUGUCCUGGGGUaguugcagguuuauaggcuaccccagucuucagauacaugaggccuuuuugcucuguggucccauaguccuguagaugug
......(((((((.(((...((((.(((......((((((.(((.((.(((((.(((((((((((((((...........)))))))))))......)))).)))))))))).))))))...)))))))..)))..))))).)).

Structure

uucccg  -     -u   cuu    u   ugcuuu      U   A  U     U    ------           gcag 
      gc ucuac  gac   uggg gcu      ggguag GAG GC CUCAU UGUC      CUGGGGUaguu    g
      || |||||  |||   |||| |||      |||||| ||| || ||||| ||||      |||||||||||    u
      ug agaug  cug   accc ugg      cucguu uuc cg gagua auag      gaccccaucgg    u
-----g  u     uc   -au    -   ---ugu      u   -  -     c    acuucu           auau 

Annotation confidence Not enough data

Genome context

chr23: 49691515-49691659 [-]

Mature eca-miR-8950

• Accession: MIMAT0034479
• Description: Equus caballus eca-miR-8950 mature miRNA
• Sequence: 41 - UGAGAGCUCUCAUUUGUCCUGGGGU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545