Stem-loop eca-mir-3958

Accession

MI0028104

Description

Equus caballus eca-mir-3958 precursor miRNA

Sequence

284441 reads, 287.0 reads per million, 168 experiments

ggcggagaaacagggucacagaagcuggucugagauguucgaaaggAGGUUGUCCGUGAUGUAUUUGCuuuguuuguggCAGAUAUUGCACGGUUGAUCUCUUuucaucaucaaaugccuucucgaaggacuugcugcgcggu
.(((.((...((((.((...((.(..(((.(..((((...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))..))))..).)))..)))....)))))))).)))...

Structure

--g   g  aaa    g  -aca  a cu   c ga    uuc           GU     AU         uug 
   gcg ag   cagg uc    ga g  ggu u  gaug   gaaaggAGGUU  CCGUG  GUAUUUGCu   u
   ||| ||   |||| ||    || |  ||| |  ||||   |||||||||||  |||||  |||||||||    
   cgc uc   guuc ag    cu c  ccg a  cuac   cuuUUCUCUAG  GGCAC  UAUAGACgg   u
ugg   g  ---    -  gaag  - uu   u aa    -ua           UU     GU         ugu 

Annotation confidence High

Genome context

24: 43346664-43346806 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from eca-mir-3958

Mature eca-miR-3958-5p

• Accession: MIMAT0051512
• Description: Equus caballus eca-miR-3958-5p mature miRNA
• Sequence: 47 - AGGUUGUCCGUGAUGUAUUUGC - 68
• Evidence: experimental ; Illumina [1]

Mature eca-miR-3958-3p

• Accession: MIMAT0034486
• Description: Equus caballus eca-miR-3958-3p mature miRNA
• Sequence: 80 - CAGAUAUUGCACGGUUGAUCUCUU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545