Stem-loop eca-mir-329b

Accession

MI0028106

Description

Equus caballus eca-mir-329b precursor miRNA

Sequence

63782 reads, 112.0 reads per million, 166 experiments

aaucagugguauucaugucgguguuaauugguaccugaagaGAGGUUUUCUAGGUCUCUGUUUcuuuagugagggugaAACGAACCUGGUUAACCUCUUUUccaguaucagaucccaccuuggaggccuucugguccagau
.(((((.(((.((((....((((....(((((((..(((((((((((..((((((.((.(((((............)))))))))))))..)))))))))))..)))))))....)))).)))).)))..)))))......

Structure

-----a     -u   a    uguc    uuaa       cu           UU      C  U     uuuag 
      aucag  ggu uuca    ggug    uugguac  gaagaGAGGUU  CUAGGU UC GUUUc     u
      |||||  ||| ||||    ||||    |||||||  |||||||||||  |||||| || |||||      
      ugguc  ccg aggu    ccac    gacuaug  cUUUUCUCCAA  GGUCCA AG CAAag     g
uagacc     uu   g    ---u    ccua       ac           UU      -  -     uggga 

Annotation confidence High

Genome context

24: 43338279-43338419 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from eca-mir-329b

Mature eca-miR-329b-5p

• Accession: MIMAT0051513
• Description: Equus caballus eca-miR-329b-5p mature miRNA
• Sequence: 42 - GAGGUUUUCUAGGUCUCUGUUU - 63
• Evidence: experimental ; Illumina [1]

Mature eca-miR-329b-3p

• Accession: MIMAT0034487
• Description: Equus caballus eca-miR-329b-3p mature miRNA
• Sequence: 79 - AACGAACCUGGUUAACCUCUUUU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545