Stem-loop eca-mir-154b

Accession

MI0028108

Description

Equus caballus eca-mir-154b precursor miRNA

Literature search

1 open access papers mention eca-mir-154b
(2 sentences)

Sequence

11804 reads, 41.0 reads per million, 154 experiments

ugcagguuuuccuaccagagcuacucggcggugcuugaagAGAGGUCUUCCAUGAUGCAUUCGcuuuauuuuucgacgAAUCAUACAUGGUUGACCUUUUUuuaaguaucaaaucuggccuuaaagcacccugggacgagg
...(((....))).((((.(((....(((((((((((((((((((((..((((((((.((((((..........).)))))))).)))))..)))))))))))))))))).......)))....)))...)))).......

Structure

ugcagguuuuccua    --a   acuc   -------                  UU     -   C     - uuua 
              ccag   gcu    ggc       ggugcuugaagAGAGGUC  CCAUG AUG AUUCG c    u
              ||||   |||    |||       ||||||||||||||||||  ||||| ||| ||||| |     
              gguc   cga    ccg       cuaugaauuUUUUUCCAG  GGUAC UAC UAAgc g    u
-------ggagcag    cca   aauu   gucuaaa                  UU     A   -     a cuuu 

Annotation confidence High

Genome context

24: 43369045-43369185 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from eca-mir-154b

Mature eca-miR-154b-5p

• Accession: MIMAT0051514
• Description: Equus caballus eca-miR-154b-5p mature miRNA
• Sequence: 41 - AGAGGUCUUCCAUGAUGCAUUCG - 63
• Evidence: experimental ; Illumina [1]

Mature eca-miR-154b-3p

• Accession: MIMAT0034489
• Description: Equus caballus eca-miR-154b-3p mature miRNA
• Sequence: 79 - AAUCAUACAUGGUUGACCUUUUU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545