Stem-loop eca-mir-449b

Accession

MI0028109

Description

Equus caballus eca-mir-449b precursor miRNA

Literature search

1 open access papers mention eca-mir-449b
(2 sentences)

Sequence

16581 reads, 247.0 reads per million, 98 experiments

cguggaaagcagcagugaccugagucagguAGGCAGUGUGUUGUUAGCUGGCUGCuuuaggucaauucagCAGCCACAACUACCCUGCCACUUGcuucuggauaaauucuucucauuaacaaagu
.((((.(((.........((.(((.(((((.(((((.(((((((.....(((((((..(......)..)))))))))))).)).)))))))))).))).)).......))).)))).........

Structure

--------c    a   cagcaguga  u   u     A     U  -     UAGCU       uu gg 
         gugg aag         cc gag caggu GGCAG GU GUUGU     GGCUGCu  a  u
         |||| |||         || ||| ||||| ||||| || |||||     |||||||  |   
         uacu uuc         gg cuu GUUCA CCGUC CA CAACA     CCGACga  u  c
ugaaacaau    c   --uuaaaua  u   c     -     C  U     -----       cu aa 

Annotation confidence Medium

Genome context

21: 17771175-17771299 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-449b

Mature eca-miR-449b-5p

• Accession: MIMAT0034490
• Description: Equus caballus eca-miR-449b-5p mature miRNA
• Sequence: 31 - AGGCAGUGUGUUGUUAGCUGGCUGC - 55
• Evidence: experimental ; Illumina [1]

Mature eca-miR-449b-3p

• Accession: MIMAT0061129
• Description: Equus caballus eca-miR-449b-3p mature miRNA
• Sequence: 71 - CAGCCACAACUACCCUGCCACUUG - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545