Stem-loop eca-mir-8960

Accession

MI0028113

Description

Equus caballus eca-mir-8960 precursor miRNA

Sequence

1 reads, 0 reads per million, 1 experiments

cuggccgugugggccccagccucugcguucuggggccuguggcugguguggagcguguggagggaggugcuguCCAUGCAACCUGGCCUAGGCUCUgcggcaccugggggcggggcuguuggcgggccucu
..((((((...((((((.(((((((.((.((((((((((.((((((.((...((..(((((.((.....)).))))))).)))))))))))))))..))).)).)))))))))))))....)).))))...

Structure

-cu    -  -gug      a       c  u   --       u      u  gga  gu     g  a 
   ggcc gu    ggcccc gccucug gu cug  gggccug ggcugg gu   gc  gugga gg g
   |||| ||    |||||| ||||||| || |||  ||||||| |||||| ||   ||  ||||| || g
   ccgg cg    ucgggg cgggggu ca ggc  CUCGGAU CCGGUC CA   CG  UACCu uc u
ucu    g  guug      -       c  c   gU       -      -  --A  --     g  g 

Annotation confidence Not enough data

Genome context

chr21: 56754919-56755049 [+]

Mature eca-miR-8960

• Accession: MIMAT0034494
• Description: Equus caballus eca-miR-8960 mature miRNA
• Sequence: 74 - CCAUGCAACCUGGCCUAGGCUCU - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545