Stem-loop eca-mir-8961

Accession

MI0028114

Description

Equus caballus eca-mir-8961 precursor miRNA

Sequence

20 reads, 3 reads per million, 1 experiments

guggcuuuguuuucagcuggaccaucaaagcagacgggaaUUACAGUGAGUCCCAUGCCUGACCUccagaauuuguguaggggagggagguuacaggcaugauauuuaggugaugucuguuaggacuucagcaccuuggcugccu
..(((...(((....((((((...((..(((((((....(((((..(((((..((((((((((((((....(((.....)))...))))))..))))))))..))))).))))))))))))..)).)))))).....))).))).

Structure

gu   uuu   -uuca      cca  aa       ggga     AG     CC        --      agaa   g 
  ggc   guu     gcugga   uc  agcagac    aUUAC  UGAGU  CAUGCCUG  ACCUcc    uuu u
  |||   |||     ||||||   ||  |||||||    |||||  |||||  ||||||||  ||||||    ||| g
  ccg   cgg     cgacuu   ag  uugucug    uagug  auuua  guacggac  uggagg    ggg u
-u   --u   uucca      --c  ga       ----     -g     ua        au      -gag   a 

Annotation confidence Not enough data

Genome context

chr22: 19571396-19571540 [+]

Mature eca-miR-8961

• Accession: MIMAT0034495
• Description: Equus caballus eca-miR-8961 mature miRNA
• Sequence: 41 - UUACAGUGAGUCCCAUGCCUGACCU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545