Stem-loop eca-mir-1388

Accession

MI0028115

Description

Equus caballus eca-mir-1388 precursor miRNA

Literature search

2 open access papers mention eca-mir-1388
(2 sentences)

Sequence

1169943 reads, 1314.0 reads per million, 219 experiments

cuccaccggucgcccuugggcagugacuccAGGACUGUCCAACCUGAGAAUGGUgagucuccagggucgUUCUCAGGUUCGUCAGCCCAUGAgaugcugccccuuccccagcaguggcugcca
.......(((.(((((.(((((((..(((..((.(((.(.(((((((((((((((......))...))))))))))))).).))).))..)))..)))))))..........)).))).))).

Structure

cuccacc   c   -  ---------u       ga   cA  A   U C             ---  ag 
       ggu gcc cu          gggcagu  cuc  GG CUG C AACCUGAGAAUGG   Ug  u
       ||| ||| ||          |||||||  |||  || ||| | |||||||||||||   ||   
       ccg cgg ga          cccgucg  gAG  CC GAC G UUGGACUCUUgcu   ac  c
------a   u   u  cgaccccuuc       ua   UA  C   U C             ggg  cu 

Annotation confidence High

Genome context

22: 50627476-50627598 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-1388

Mature eca-miR-1388-5p

• Accession: MIMAT0034496
• Description: Equus caballus eca-miR-1388-5p mature miRNA
• Sequence: 31 - AGGACUGUCCAACCUGAGAAUGGU - 54
• Evidence: experimental ; Illumina [1]

Mature eca-miR-1388-3p

• Accession: MIMAT0061130
• Description: Equus caballus eca-miR-1388-3p mature miRNA
• Sequence: 70 - UUCUCAGGUUCGUCAGCCCAUGA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545