Stem-loop eca-mir-1388

Accession

MI0028115

Description

Equus caballus eca-mir-1388 precursor miRNA

Literature search

2 open access papers mention eca-mir-1388
(2 sentences)

Sequence

9193 reads, 1392 reads per million, 1 experiments

cuccaccggucgcccuugggcagugacuccAGGACUGUCCAACCUGAGAAUGGUgagucuccagggucguucucagguucgucagcccaugagaugcugccccuuccccagcaguggcugcca
.......(((.(((((.(((((((..(((..((.(((.(.(((((((((((((((......))...))))))))))))).).))).))..)))..)))))))..........)).))).))).

Structure

cuccacc   c   -  ---------u       ga   cA  A   U C             ---  ag 
       ggu gcc cu          gggcagu  cuc  GG CUG C AACCUGAGAAUGG   Ug  u
       ||| ||| ||          |||||||  |||  || ||| | |||||||||||||   ||   
       ccg cgg ga          cccgucg  gag  cc gac g uuggacucuugcu   ac  c
------a   u   u  cgaccccuuc       ua   ua  c   u c             ggg  cu 

Annotation confidence High

Genome context

chr22: 49647210-49647332 [-]

Mature eca-miR-1388

• Accession: MIMAT0034496
• Description: Equus caballus eca-miR-1388 mature miRNA
• Sequence: 31 - AGGACUGUCCAACCUGAGAAUGGU - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545