Stem-loop eca-mir-8964

Accession

MI0028118

Description

Equus caballus eca-mir-8964 precursor miRNA

Sequence

262 reads, 1.0 reads per million, 86 experiments

gacaggacccagacuagggcgagacaggagaggcaccuggAGUGUAGAAUUUAAGGAGAUGCGcacuaucaaccugaaacGCCUCCUUAAAUUCUGCACCCUgggagccucucuugcuuuauccuagucccagacgugccc
..((.(.....((((((((.(((.((((((((((.(((((.(((((((((((((((((..(((................)))))))))))))))))))).))))).)))))))))))))..)))))))).....).))...

Structure

-ga  g accca        -c   a          a     A                 AU   cacuauc 
   ca g     gacuaggg  gag caggagaggc ccugg GUGUAGAAUUUAAGGAG  GCG       a
   || |     ||||||||  ||| |||||||||| ||||| |||||||||||||||||  |||        
   gu c     cugauccu  uuc guucucuccg gggUC CACGUCUUAAAUUCCUC  CGc       a
ccc  g agacc        au   -          a     C                 --   aaagucc 

Annotation confidence High

Genome context

22: 27140223-27140363 [+]

Mature eca-miR-8964-5p

• Accession: MIMAT0034499
• Description: Equus caballus eca-miR-8964-5p mature miRNA
• Sequence: 41 - AGUGUAGAAUUUAAGGAGAUGCG - 63
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8964-3p

• Accession: MIMAT0051515
• Description: Equus caballus eca-miR-8964-3p mature miRNA
• Sequence: 81 - GCCUCCUUAAAUUCUGCACCCU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545