miRBase entry: eca-mir-7045

Stem-loop eca-mir-7045


Accession
MI0028124
Description
Equus caballus eca-mir-7045 precursor miRNA


Sequence

115 reads, 15.0 reads per million, 29 experiments
cgagugacaggcuuuccuugaggugCUGGCGGCCGGGGGAGGGGGAGUugcccguggagacucgcUCACUCUGGCCCCCCGGCCGCCAGggcacggucaucguggagcgcu
.........(((.((((.((((((.((((((((((((((.(((.(((((.((...)).))))).)))........)))))))))))))).)).).....))).)))).)))

Structure
cgagugaca   u    u   ----- -  g              -------A   G     g  c 
         ggc uucc uga     g gu CUGGCGGCCGGGGG        GGG GAGUu cc  
         ||| |||| |||     | || ||||||||||||||        ||| ||||| || g
         ucg gagg gcu     c cg GACCGCCGGCCCCC        CUc cucag gg  
---------   c    u   acugg a  g              CGGUCUCA   g     a  u 


Annotation confidence High
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Genome context
5: 42169356-42169466 [+]

Database links

Mature eca-miR-7045-5p

Accession MIMAT0034505
Description Equus caballus eca-miR-7045-5p mature miRNA
Sequence 26 - CUGGCGGCCGGGGGAGGGGGAGU - 48
Evidence experimental
Illumina [1]

Mature eca-miR-7045-3p

Accession MIMAT0051517
Description Equus caballus eca-miR-7045-3p mature miRNA
Sequence 66 - UCACUCUGGCCCCCCGGCCGCCAG - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545