Stem-loop eca-mir-8970

Accession

MI0028126

Description

Equus caballus eca-mir-8970 precursor miRNA

Sequence

7 reads, 1 reads per million, 1 experiments

ggcggcgggcggaggcguggccaggcaguauaagaacggagggggcggcggcgcuacggcucauucggugcagcuGCCUGGGGGCUGUAGUGUCCGCGCCgcuccugcugggggcugcccacgccaaagaccugc
....((((((...(((((((....(((((.......(((.((((((((((((((((((((((..((((.((....))))))))))))))))))...)))))))))).)))...))))))))))))...).)))))

Structure

ggcg     - gga       ccag     auaagaa   a          ---            au    u  a 
    gcggg c   ggcgugg    gcagu       cgg gggggcggcg   gcgcuacggcuc  ucgg gc g
    ||||| |   |||||||    |||||       ||| ||||||||||   ||||||||||||  |||| ||  
    cgucc g   ccgcacc    cgucg       guc uccucgCCGC   UGUGAUGUCGGG  GGUC CG c
----     a aaa       ----     ----ggg   g          GCC            --    -  u 

Annotation confidence Not enough data

Genome context

chr5: 51512258-51512392 [-]

Mature eca-miR-8970

• Accession: MIMAT0034507
• Description: Equus caballus eca-miR-8970 mature miRNA
• Sequence: 76 - GCCUGGGGGCUGUAGUGUCCGCGCC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545