Stem-loop eca-mir-8970

Accession

MI0028126

Description

Equus caballus eca-mir-8970 precursor miRNA

Sequence

673 reads, 8.0 reads per million, 104 experiments

ggcggcgggcggaggcguggccaggcaguauaagaacggagggggcggcggcgcuacggcucAUUCGGUGCAGCUGCCUGGGGGCUGUAGUGUCCGCgccgcuccugcugggggcugcccacgccaaagaccugc
....((((((...(((((((....(((((.......(((.((((((((((((((((((((((..((((.((....))))))))))))))))))...)))))))))).)))...))))))))))))...).)))))

Structure

ggcg     - gga       ccag     auaagaa   a          ---            AU    U  A 
    gcggg c   ggcgugg    gcagu       cgg gggggcggcg   gcgcuacggcuc  UCGG GC G
    ||||| |   |||||||    |||||       ||| ||||||||||   ||||||||||||  |||| ||  
    cgucc g   ccgcacc    cgucg       guc uccucgccgC   UGUGAUGUCGGG  GGUC CG C
----     a aaa       ----     ----ggg   g          GCC            --    -  U 

Annotation confidence Medium

Genome context

5: 48088808-48088942 [-]

Mature eca-miR-8970-5p

• Accession: MIMAT0051518
• Description: Equus caballus eca-miR-8970-5p mature miRNA
• Sequence: 63 - AUUCGGUGCAGCUGCCUG - 80
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8970-3p

• Accession: MIMAT0034507
• Description: Equus caballus eca-miR-8970-3p mature miRNA
• Sequence: 76 - GCCUGGGGGCUGUAGUGUCCGC - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545