Stem-loop eca-mir-8971

Accession

MI0028127

Description

Equus caballus eca-mir-8971 precursor miRNA

Sequence

210 reads, 5 reads per million, 1 experiments

agaguguccugaguguguacugugcgggcguggugcugcgugcagacauucucaucuauucauucagccagagugUCCUGAGUGUGUACUGUGCGGGCGUgguccuggacgcugggugcagacguccucggggga
....(.(((((((.((((.((((((.(((((((((((.(((((((((((.((((......(((((.....)))))...)))).)))).)))))))))))....))...)))))..))))))))).)))))))).)

Structure

agag g       u -   a      -g     ---  ----    g       -    u    ucuauu     a 
    u uccugag g ugu cugugc  ggcgu   gg    ugcu cgugcag acau cuca      cauuc g
    | ||||||| | ||| ||||||  |||||   ||    |||| ||||||| |||| ||||      ||||| c
    a ggggcuc c gca gacgug  ucgca   cc    GCGG GCGUGUC UGUG GAGU      gugag c
---- g       - u   -      gg     ggu  uggU    -       A    U    ---CCU     a 

Annotation confidence Not enough data

Genome context

chr5: 93960446-93960580 [+]

Mature eca-miR-8971

• Accession: MIMAT0034508
• Description: Equus caballus eca-miR-8971 mature miRNA
• Sequence: 76 - UCCUGAGUGUGUACUGUGCGGGCGU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545