Stem-loop eca-mir-8983

Accession

MI0028139

Description

Equus caballus eca-mir-8983 precursor miRNA

Sequence

5 reads, 1 reads per million, 1 experiments

ggaggagaaguugaggcagguggucaagcaaguccugaagUGCGAUGUGACUCAGAGCCAGCCGCugggcgcugucccccugccccuggcugacugccugcugagcacgcugugccuggaugccgccugcccugaccucccugcc
(.(((.((.((((.((((((((((.......((((....(((((.((((.(((((((.((((.((((((.((.........)).)))))).).))).)).))))))))).)))))..)))))))))))))).)))).))))).).

Structure

- g   a  a    a          caagcaa    ugaa     A    A     -  C   - C      c  ugu 
 g agg ga guug ggcagguggu       gucc    gUGCG UGUG CUCAG AG CAG C GCuggg gc   c
 | ||| || |||| ||||||||||       ||||    ||||| |||| ||||| || ||| | |||||| ||   c
 c ucc cu cagu ccguccgccg       uagg    cgugu gcac gaguc uc guc g cggucc cg   c
c g   -  c    c          -------    --uc     c    -     g  c   a u      c  ucc 

Annotation confidence Not enough data

Genome context

chr7: 22665788-22665932 [+]

Mature eca-miR-8983

• Accession: MIMAT0034520
• Description: Equus caballus eca-miR-8983 mature miRNA
• Sequence: 41 - UGCGAUGUGACUCAGAGCCAGCCGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545