miRBase entry: eca-mir-8986a

Stem-loop eca-mir-8986a


Accession
MI0028142
Description
Equus caballus eca-mir-8986a precursor miRNA


Sequence

22790 reads, 50.0 reads per million, 154 experiments
uugaugugaaccgagagaacuugucGUCGAGGCUAGAGUCACGCUUGGguaucagcuauugccuUAGUGUGCUAGAGUCCUCGAAGAGuaacugcugaccuuauucacuggcu
.....(((((..(((((......((.((((((((..((.((((((.(((((........))))).))))))))..)).)))))).)).......))...))).))))).....

Structure
uugau     cc   ---  -aacuug  G      -  AG  U      U     uca 
     gugaa  gag   ag       uc UCGAGG CU  AG CACGCU GGgua   g
     |||||  |||   ||       || |||||| ||  || |||||| |||||    
     cacuu  uuc   uc       AG AGCUCC GA  UC GUGUGA uccgu   c
ucggu     -a   cag  gucaauG  A      U  GA  -      U     uau 


Annotation confidence High
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Genome context
7: 80259842-80259954 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-8986a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8986a-5p

Accession MIMAT0051521
Description Equus caballus eca-miR-8986a-5p mature miRNA
Sequence 26 - GUCGAGGCUAGAGUCACGCUUGG - 48
Evidence experimental
Illumina [1]

Mature eca-miR-8986a-3p

Accession MIMAT0034523
Description Equus caballus eca-miR-8986a-3p mature miRNA
Sequence 65 - UAGUGUGCUAGAGUCCUCGAAGAG - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545