miRBase entry: eca-mir-8986b

Stem-loop eca-mir-8986b


Accession
MI0028151
Description
Equus caballus eca-mir-8986b precursor miRNA


Sequence

11367 reads, 176.0 reads per million, 154 experiments
guaauggaguggaggcggggcuacguuuugCCCGAGACUAGAGUCACAUCCUGAcacagcucuuguccUGGUGUGCUAGAGUCCUCGGAGAaaaucugcuggucuugauucacuggcgagg
((....((((.(((((..(((...(((((..((((((((..((.((((((..((((.......))))..))))))))..))).)))))..)))))..))).))))).))))....))....

Structure
----  aaug    g     gg   uac     gC     -   AG  U      CU    ca 
    gu    gagu gaggc  ggc   guuuu  CCGAG ACU  AG CACAUC  GAca  g
    ||    |||| |||||  |||   |||||  ||||| |||  || ||||||  ||||  c
    cg    cuua uucug  ucg   uaaaA  GGCUC UGA  UC GUGUGG  cugu  u
ggag  guca    g     -g   -uc     GA     C   GA  -      Uc    uc 


Annotation confidence High
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Genome context
7: 80261227-80261347 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-8986b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8986b-5p

Accession MIMAT0051523
Description Equus caballus eca-miR-8986b-5p mature miRNA
Sequence 31 - CCCGAGACUAGAGUCACAUCCUGA - 54
Evidence experimental
Illumina [1]

Mature eca-miR-8986b-3p

Accession MIMAT0034532
Description Equus caballus eca-miR-8986b-3p mature miRNA
Sequence 69 - UGGUGUGCUAGAGUCCUCGGAGA - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545