Stem-loop eca-mir-8996

Accession

MI0028154

Description

Equus caballus eca-mir-8996 precursor miRNA

Sequence

58 reads, 4.0 reads per million, 10 experiments

ccgcggggaccugcucggggacggccggccuggccUGCGGACCCGAGCGGACGCCGGACGagaugcuuguggaugaauugucccgcgugcugcgguguggcgccgggccggacguggauguguauaaaccugcug
..(((((....(((.((...(((.((((((((((((((..(((...((((((((.((((((.((.(....).))...)))))).)))).))))))))))).)))))))))).)))...)).)))....)))))..

Structure

cc     gacc   u  ggg   g          -    GG   CGA    -    C      --g  g u 
  gcggg    ugc cg   acg ccggccuggc cUGC  ACC   GCGG ACGC GGACGa   au c u
  |||||    ||| ||   ||| |||||||||| ||||  |||   |||| |||| ||||||   || |  
  cgucc    aug gu   ugc ggccgggccg ggug  ugg   cguc ugcg ccuguu   ua g g
gu     aaau   u  agg   a          c    --   ---    g    c      aag  g u 

Annotation confidence Not enough data

Genome context

7: 3127873-3128007 [+]

Mature eca-miR-8996-5p

• Accession: MIMAT0034535
• Description: Equus caballus eca-miR-8996-5p mature miRNA
• Sequence: 36 - UGCGGACCCGAGCGGACGCCGGACG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545