Stem-loop eca-mir-9003

Accession

MI0028163

Description

Equus caballus eca-mir-9003 precursor miRNA

Sequence

109 reads, 10 reads per million, 1 experiments

ccaggugauagaaggaggcuuucgcuucgcucccacugugGCCCACUCUGCUUUGAUGCUUcuaaguuuuagaaguccaagcacccacuucagggugugcaagucaguggagagguggagcugagcgcugcgugggu
(((.((.........((((((..(((((((((((((((..((.((((((((((.(..((((((((...))))))))).)))).........)))))).))....)))))).)).))))))).)))).)))).)))..

Structure

--   g  gauagaagg  -    uc       -  -      --ug  C      ---------    U AU        g 
  cca gu         ag gcuu  gcuucgc uc ccacug    GC CACUCU         GCUU G  GCUUcuaa  
  ||| ||         || ||||  ||||||| || ||||||    || ||||||         |||| |  |||||||| u
  ggu cg         uc cgag  cgaggug ag ggugac    cg guggga         cgaa c  ugaagauu  
ug   g  ---------  g    -u       g  a      ugaa  u      cuucaccca    c --        u 

Annotation confidence Not enough data

Genome context

chr8: 3661123-3661259 [+]

Mature eca-miR-9003

• Accession: MIMAT0034543
• Description: Equus caballus eca-miR-9003 mature miRNA
• Sequence: 41 - GCCCACUCUGCUUUGAUGCUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545