miRBase entry: eca-mir-9008

Stem-loop eca-mir-9008


Accession
MI0028169
Description
Equus caballus eca-mir-9008 precursor miRNA


Sequence

21 reads, 2.0 reads per million, 4 experiments
gugaggaccaggcagcccuguacuguccccUGCCAGCUGUCAGAAGACCCGAGUGcugugcggcucuagggcauucucgaugcuacugacccgcggcugggcugggcuugcaggaacucuggaag
.......(((((....((((((..((((....(((((((((((.((...((((((((.((......)).))))..))))...)).)))))....))))))...)))).))))))...)))))...

Structure
gugagga     cagc      cu    ccUG      ----     A  ACC    --    g  cg 
       ccagg    ccugua  gucc    CCAGCU    GUCAG AG   CGAG  UGcu ug  g
       |||||    ||||||  ||||    ||||||    ||||| ||   ||||  |||| ||   
       ggucu    ggacgu  cggg    ggucgg    caguc uc   gcuc  acgg au  c
----gaa     -caa      -u    -ucg      cgcc     a  gua    uu    g  cu 


Annotation confidence Not enough data
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Genome context
8: 2515482-2515606 [+]

Database links

Mature eca-miR-9008-5p

Accession MIMAT0034548
Description Equus caballus eca-miR-9008-5p mature miRNA
Sequence 31 - UGCCAGCUGUCAGAAGACCCGAGUG - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545