Stem-loop eca-mir-9012

Accession

MI0028174

Description

Equus caballus eca-mir-9012 precursor miRNA

Sequence

9 reads, 1 reads per million, 1 experiments

gagcagcucugccugccuggccaguucuuggugggaaaggacccuugucugugucggcccagcgccucccacugagucccUGGGUCUCUGAUGCAGCACCAGGCAccuuggaauguggggagcgggugcccggggcugcuggacg
.(((((((((((((((((..((((((((.((((.........(((.((((((((((((((((.(.(((.....))).).)))))))...))))))).)).)))))))..))))).))))).))))))....))))))))).....

Structure

----g         ----      -  gg   -     -u    ggaaaggac   u  -       ---       c c   c 
     agcagcucu    gccugc cu  cca guucu  ggug         ccu gu cuguguc   ggcccag g cuc c
     |||||||||    |||||| ||  ||| |||||  ||||         ||| || |||||||   ||||||| | ||| a
     ucgucgggg    ugggcg gg  ggu uaagg  ccAC         GGA CA GACGUAG   CUGGGUc c gag c
gcagg         cccg      a  --   g     uu    ---------   C  C       UCU       c u   u 

Annotation confidence Not enough data

Genome context

chr8: 13963340-13963484 [+]

Mature eca-miR-9012

• Accession: MIMAT0034553
• Description: Equus caballus eca-miR-9012 mature miRNA
• Sequence: 81 - UGGGUCUCUGAUGCAGCACCAGGCA - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545