Stem-loop eca-mir-9013

Accession

MI0028175

Description

Equus caballus eca-mir-9013 precursor miRNA

Sequence

34 reads, 5 reads per million, 1 experiments

aagaguggcagagagugagggagcuggccgguggcguagugguuaaguuagcgcacucugcuuuggcagccugggguucaCAGGUUCAAAUCACAGGUGUAGACCuagcacugcucaucaaggcaugcuauggugcugucccaca
....((((..((.((((....(((..((((((((.((((((.(((.(((.((((.((.((.(((((..(((((.......)))))))))).)).)))))).))).))))))))))))))..)))..)))....)))).)))))).

Structure

aaga    ca  g    aggg   ug   --     c      g   a   a    a  c  c     ca     gg 
    gugg  ga agug    agc  gcc  ggugg guagug uua guu gcgc cu ug uuugg  gccug  g
    ||||  || ||||    |||  |||  ||||| |||||| ||| ||| |||| || || |||||  |||||  u
    cacc  cu ucgu    ucg  cgg  cuacu cgucac gau CAG UGUG GA AC AAACU  UGGAC  u
---a    --  g    ggua   ua   aa     -      -   C   A    -  C  U     --     ac 

Annotation confidence Not enough data

Genome context

chr8: 28438717-28438861 [-]

Mature eca-miR-9013

• Accession: MIMAT0034554
• Description: Equus caballus eca-miR-9013 mature miRNA
• Sequence: 81 - CAGGUUCAAAUCACAGGUGUAGACC - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545