Stem-loop eca-mir-1249

Accession

MI0028185

Description

Equus caballus eca-mir-1249 precursor miRNA

Literature search

1 open access papers mention eca-mir-1249
(1 sentences)

Sequence

27 reads, 4 reads per million, 1 experiments

gucccagcucaucuuguuccucagauucuuguuugcguggggaggagggaggagaugggccaaguucccucugccuggAACGCCCUUCCCCCCCUUCUUCAccuggcgaacuccuacucguccuucaagacccagcucaag
.....((((..(((((..............((((((..(((((((((((.((.((.((((...(((((........))))))))).)).))))))))))).))..))))))..............)))))...))))....

Structure

guccc    -ca     uuccucagauucuu      gu  -         a  a  u    caa     cuc 
     agcu   ucuug              guuugc  gg ggaggaggg gg ga gggc   guucc   u
     ||||   |||||              ||||||  || ||||||||| || || ||||   |||||    
     ucga   agaac              caagcg  cc CUUCUUCCC CC CU CCCG   CAAgg   g
-gaac    ccc     uuccugcucauccu      gu  A         -  C  U    ---     ucc 

Annotation confidence Not enough data

Genome context

chr28: 41193631-41193771 [-]

Mature eca-miR-1249

• Accession: MIMAT0034563
• Description: Equus caballus eca-miR-1249 mature miRNA
• Sequence: 79 - AACGCCCUUCCCCCCCUUCUUCA - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545