Stem-loop eca-mir-9033-1

Accession

MI0028197

Description

Equus caballus eca-mir-9033-1 precursor miRNA

Sequence

1 reads, 0 reads per million, 1 experiments

auggcccagcuggggucgcaaccuaggucaaucugaccccaaaggcugugcuugcacaggagcccaaggaggugccUCUGAGCCCAGCCUUGGAGGUgaguccacggagguuggggggcgacagggagggacacugc
.((.(((..((...(((((..(((((.((...((.(((((((.(((((.(((((...(((.(((......))).))).))))).))))))))).))).))......))..)))))..))))).))..))).))....

Structure

---a  g   ag  ggg     aa     -g  ---aau  g   -    a     u     cac   a   ca 
    ug ccc  cu   gucgc  ccuag  uc      cu acc ccaa ggcug gcuug   agg gcc  a
    || |||  ||   |||||  |||||  ||      || ||| |||| ||||| |||||   ||| |||   
    ac ggg  gg   cagcg  ggguu  ag      ga UGG GGUU CCGAC CGAGU   Ucc ugg  g
cguc  a   ag  --a     gg     gg  gcaccu  g   A    -     C     --C   g   ag 

Annotation confidence Not enough data

Genome context

chr25: 35403510-35403646 [+]

Mature eca-miR-9033

• Accession: MIMAT0034575
• Description: Equus caballus eca-miR-9033 mature miRNA
• Sequence: 77 - UCUGAGCCCAGCCUUGGAGGU - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545