Stem-loop eca-mir-9040

Accession

MI0028204

Description

Equus caballus eca-mir-9040 precursor miRNA

Sequence

4359 reads, 7.0 reads per million, 129 experiments

gaugccugugcuggaacugacugacugCUGGCAUCCUGCAAGGCAGUGUGGgauggaacACUGUCCUACCGGAUGCCAGUAGCcagaguccccaccucuuuca
((.....(((..(((.((..(((.((((((((((((.(..(((((((((........)))))).)))..))))))))))))).)))))))).))).....)).

Structure

-  ugccu   cu   a  ga   a            U CA   -      GGg 
 ga     gug  gga cu  cug cugCUGGCAUCC G  AGG CAGUGU   a
 ||     |||  ||| ||  ||| |||||||||||| |  ||| ||||||    
 cu     cac  ccu ga  gac GAUGACCGUAGG C  UCC GUCAca   u
a  uucuc   -c   -  --   C            - CA   U      agg 

Annotation confidence Medium

Genome context

25: 38670096-38670198 [+]

Mature eca-miR-9040-5p

• Accession: MIMAT0051532
• Description: Equus caballus eca-miR-9040-5p mature miRNA
• Sequence: 28 - CUGGCAUCCUGCAAGGCAGUGUGG - 51
• Evidence: experimental ; Illumina [1]

Mature eca-miR-9040-3p

• Accession: MIMAT0034582
• Description: Equus caballus eca-miR-9040-3p mature miRNA
• Sequence: 60 - ACUGUCCUACCGGAUGCCAGUAGC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545