Stem-loop eca-mir-9048

Accession

MI0028216

Description

Equus caballus eca-mir-9048 precursor miRNA

Sequence

728 reads, 3.0 reads per million, 105 experiments

cggcccuccguaucugugagcucugcaucugcgggaUUCAACCAACCGCGGAUCGUGUauguacugugguuaCCAUCUGCAGUUGGCUGAGCCCacgggugcagaauccaccaauacagaggaccuagu
.((.((((.((((..(((...((((((((((.(((.((((.(((((.((((((.(((.((........))))).)))))).))))).))))))).))))))))))...)))..)))).)))).))....

Structure

---c  c    c    cu   agc          c   a    A     C      C   U  gua 
    gg ccuc guau  gug   ucugcaucug ggg UUCA CCAAC GCGGAU GUG au   c
    || |||| ||||  |||   |||||||||| ||| |||| ||||| |||||| ||| ||    
    cc ggag caua  cac   agacgugggc CCC GAGU GGUUG CGUCUA Cau ug   u
ugau  a    a    ac   cua          a   -    C     A      C   -  gug 

Annotation confidence High

Genome context

1: 40945770-40945898 [-]

Mature eca-miR-9048-5p

• Accession: MIMAT0051535
• Description: Equus caballus eca-miR-9048-5p mature miRNA
• Sequence: 37 - UUCAACCAACCGCGGAUCGUGU - 58
• Evidence: experimental ; Illumina [1]

Mature eca-miR-9048-3p

• Accession: MIMAT0034592
• Description: Equus caballus eca-miR-9048-3p mature miRNA
• Sequence: 73 - CCAUCUGCAGUUGGCUGAGCCC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545