Stem-loop eca-mir-9049

Accession

MI0028219

Description

Equus caballus eca-mir-9049 precursor miRNA

Sequence

6 reads, 1 reads per million, 1 experiments

caagagaugggaggucaggaguuuuaaaggUUGCAAGGAAUGCAGCUGCUUGUAGggagggggagccuguggccuugcuaaguggaguuuuccuagcagccuguauuugggcuggugaguuugcu
........(.(((.(((..(((((...(((((((.(((((.((..((((((((((((..(((...)))....)))))).)))))).)).))))).)))))))......)))))..))).))).).

Structure

caagagau g   g   gg     ---uaa       A     U  AG      -      --ag   g 
        g gag uca  aguuu      aggUUGC AGGAA GC  CUGCUU GUAGgg    ggg  
        | ||| |||  |||||      ||||||| ||||| ||  |||||| ||||||    ||| a
        c uuu agu  ucggg      uccgacg uccuu ug  ggugaa cguucc    ucc  
-------u g   g   gg     uuuaug       a     u  -a      u      ggug   g 

Annotation confidence Not enough data

Genome context

chr1: 60795287-60795411 [+]

Mature eca-miR-9049

• Accession: MIMAT0034593
• Description: Equus caballus eca-miR-9049 mature miRNA
• Sequence: 31 - UUGCAAGGAAUGCAGCUGCUUGUAG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545