Stem-loop eca-mir-9057

Accession

MI0028228

Description

Equus caballus eca-mir-9057 precursor miRNA

Sequence

accacccuggaguacgcaggcauccccagucucgggccugCAGGAGUAGCUUUGGCCUAGCCggugaccauccuuggcccaggcuggcccuacuuuguggccaggaucacaggcagggagagccugacauuccaccccc
.......((((((...(((((.(((((.(((((.((((.((((.(((((....((((.((((((.(.(((....)))))).)))))))))))))))))))))..)).....))).))).)))))))..)))))).....

Structure

accaccc      acg     a  -   a   -----  -g    u    G     CUUU    U    -  u a   u 
       uggagu   caggc uc ccc guc     uc  ggcc gCAG AGUAG    GGCC AGCC gg g cca c
       ||||||   ||||| || ||| |||     ||  |||| |||| |||||    |||| |||| || | |||  
       accuua   guccg ag ggg cgg     ag  ccgg uguu ucauc    ccgg ucgg cc c ggu c
--ccccc      -ca     -  a   a   acacu  ga    -    -     ----    -    a  - -   u 

Annotation confidence Not enough data

Genome context

chr1: 28265739-28265877 [-]

Mature eca-miR-9057

• Accession: MIMAT0034601
• Description: Equus caballus eca-miR-9057 mature miRNA
• Sequence: 41 - CAGGAGUAGCUUUGGCCUAGCC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545