Stem-loop eca-mir-9060

Accession

MI0028233

Description

Equus caballus eca-mir-9060 precursor miRNA

Sequence

10403 reads, 22.0 reads per million, 148 experiments

ggggcuaaaaucaucgucagcuggcuccuucuguggcauuGGCUUCAGCCUGCUGACAUggugcugucguauagcugUGAGCACGCUGAUGUCUGCUGCagaggccugcccagaccuccugacugaaaucgucccuguc
(((((.....(((..((((((((((..(((((((((((..(((.(((((.((((.(((....(((((...)))))))).)))).))))).))))))))))))))...).)))).....))))))))....)))))....

Structure

----     uaaaa   uc     -----    - -uc           uu   U     C    G   Uggu     c 
    ggggc     uca  gucag     cugg c   cuucuguggca  GGC UCAGC UGCU ACA    gcugu  
    |||||     |||  |||||     |||| |   |||||||||||  ||| ||||| |||| |||    ||||| g
    cccug     agu  caguc     gacc g   ggagaCGUCGU  CUG AGUCG ACGA Ugu    cgaua  
cugu     -cuaa   --     cucca    c ucc           --   U     C    G   ----     u 

Annotation confidence Medium

Genome context

2: 33795461-33795599 [-]

Mature eca-miR-9060-5p

• Accession: MIMAT0051539
• Description: Equus caballus eca-miR-9060-5p mature miRNA
• Sequence: 41 - GGCUUCAGCCUGCUGACAU - 59
• Evidence: experimental ; Illumina [1]

Mature eca-miR-9060-3p

• Accession: MIMAT0034605
• Description: Equus caballus eca-miR-9060-3p mature miRNA
• Sequence: 78 - UGAGCACGCUGAUGUCUGCUGC - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545