Stem-loop eca-mir-9068

Accession

MI0028241

Description

Equus caballus eca-mir-9068 precursor miRNA

Sequence

3 reads, 0 reads per million, 1 experiments

ucugaggaccagggagaaugccuggaccaugccgugacagAUCGUGAUCACGGGCAUCUGGCGCUgcgggguguccucugagggggccgcagaugcagguucagggugggggucgugugucaugggcaggcguguguguccuggg
........((((((...(((((((..((((((((((((..(((.(((..((..(((((((((.((.(((((....)))))..)).)))..))))))..))))).)))....)))))).).))))).))))))).....)))))).

Structure

ucugagga      --aga       ga     - -      --ag   G   UC  GG      --   G  -g     u 
        ccaggg     augccug  ccaug c cgugac    AUC UGA  AC  GCAUCU  GGC CU  cgggg g
        ||||||     |||||||  ||||| | ||||||    ||| |||  ||  ||||||  ||| ||  |||||  
        gguccu     ugcggac  gguac g gugcug    ugg acu  ug  cguaga  ccg gg  gucuc u
-------g      gugug       -g     u u      gggg   g   --  ga      cg   g  ga     c 

Annotation confidence Not enough data

Genome context

chr3: 32455695-32455839 [-]

Mature eca-miR-9068

• Accession: MIMAT0034613
• Description: Equus caballus eca-miR-9068 mature miRNA
• Sequence: 41 - AUCGUGAUCACGGGCAUCUGGCGCU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545