Stem-loop eca-mir-9078

Accession

MI0028251

Description

Equus caballus eca-mir-9078 precursor miRNA

Sequence

18 reads, 3 reads per million, 1 experiments

uugcugcugaaaugaagguccgggugcggguguaacagacggugggucuagagaugugaggguuuugugugacgagguugUACGAGGCUGUGCUGCAUCAGGGCUuggccggcgcgcucccucccugugcguucuugggggcacu
.((((.((((...(((.((.((((.(.(((.((....(.((((.(((((...(((((.(.(((((((((((((...))))))))))))).)...))))).)))))..)))).)..)).))).))))).)).))))))).))))..

Structure

-u    g    aau   g  c    u c   u  aaca a    -g     aga     --g g             g 
  ugcu cuga   gaa gu cggg g ggg gu    g cggu  ggucu   gaugu   a gguuuugugugac  
  |||| ||||   ||| || |||| | ||| ||    | ||||  |||||   |||||   | ||||||||||||| a
  acgg gguu   cuu cg gucc c ccc cg    c gccg  UCGGG   CUACG   U UCGGAGCAUguug  
uc    g    ---   g  u    - u   u  --cg g    gu     --A     UCG G             g 

Annotation confidence Not enough data

Genome context

chr3: 118350892-118351036 [+]

Mature eca-miR-9078

• Accession: MIMAT0034623
• Description: Equus caballus eca-miR-9078 mature miRNA
• Sequence: 81 - UACGAGGCUGUGCUGCAUCAGGGCU - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545