Stem-loop eca-mir-9080

Accession

MI0028253

Description

Equus caballus eca-mir-9080 precursor miRNA

Sequence

29 reads, 4 reads per million, 1 experiments

caagucccuuagucguauccgguagucugcauccaagauucaaccuaccauggaucauaaacauaguacuguacaugAUCCGAGGUUGGUUGAAUCUGUggauguggaacauguggauacagagggcuaacugucuauc
..((.(((((....(((((((....((((((((((((((((((((.(((.((((((((..(((......)))..)))))))).))).)))))))))).)))))))))).....))))))).)))))))...........

Structure

---------ca  u     aguc       -guag          -          u   a        aa   ua 
           ag cccuu    guauccg     ucugcaucca agauucaacc acc uggaucau  aca  g
           || |||||    |||||||     |||||||||| |||||||||| ||| ||||||||  |||   
           uc gggag    cauaggu     agguguaggU UCUAAGUUGG UGG GCCUAgua  ugu  u
cuaucugucaa  -     ---a       guaca          G          U   A        ca   ca 

Annotation confidence Not enough data

Genome context

chr29: 10893677-10893815 [+]

Mature eca-miR-9080

• Accession: MIMAT0034625
• Description: Equus caballus eca-miR-9080 mature miRNA
• Sequence: 78 - AUCCGAGGUUGGUUGAAUCUGU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545