Stem-loop eca-mir-9085

Accession

MI0028258

Description

Equus caballus eca-mir-9085 precursor miRNA

Sequence

338 reads, 1.0 reads per million, 91 experiments

cuuuguaaaagaaaaauccugcccgccuuuUGAUAAGCGUUCUCAUUAUGcuuucauuuacuacaggCUUAAUGAAAAGGCUUAUCAAAagggaggcaggauccacuuuauaaaaacaa
.((((((((.(....((((((((..(((((((((((((.((.((((((.((((...........)))).)))))).)).)))))))))))))..))))))))...))))))))).....

Structure

----c        a aaaa        cg             G  C      U    ucau 
     uuuguaaa g    auccugcc  ccuuuUGAUAAGC UU UCAUUA Gcuu    u
     |||||||| |    ||||||||  ||||||||||||| || |||||| ||||    u
     aaauauuu c    uaggacgg  ggaAAACUAUUCG AA AGUAAU Cgga    a
aacaa        - -acc        ag             G  A      U    cauc 

Annotation confidence High

Genome context

10: 51813291-51813409 [-]

Mature eca-miR-9085-5p

• Accession: MIMAT0051541
• Description: Equus caballus eca-miR-9085-5p mature miRNA
• Sequence: 31 - UGAUAAGCGUUCUCAUUAUG - 50
• Evidence: experimental ; Illumina [1]

Mature eca-miR-9085-3p

• Accession: MIMAT0034630
• Description: Equus caballus eca-miR-9085-3p mature miRNA
• Sequence: 68 - CUUAAUGAAAAGGCUUAUCAAA - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545