Stem-loop eca-mir-372

Accession

MI0028267

Description

Equus caballus eca-mir-372 precursor miRNA

Literature search

3 open access papers mention eca-mir-372
(33 sentences)

Sequence

8139 reads, 5150.0 reads per million, 54 experiments

ccucugggcaaaggucccgggucagcugcucagccugcgggACUCAAAUGUGGAAGCACUCUUcgaacaucgggauggAAAGUGCUGCGACAUUUGAGUGUcgccggugggcacccuccacggaacccaagcuguucuaga
..(((((((...(((.(((((...(.((((((.((.((((.((((((((((.(.((((((.((((..(....)..)))).)))))).).)))))))))).)))).)))))))))...)).))).)))...))....)))))

Structure

cc     ----  aaa   c   -  uca c      g  u    g          G A      C    aa a 
  ucugg    gc   ggu ccg gg   g ugcuca cc gcgg ACUCAAAUGU G AGCACU UUcg  c u
  |||||    ||   ||| ||| ||   | |||||| || |||| |||||||||| | |||||| ||||  |  
  agauc    cg   cca ggc cc   c acgggu gg cgcU UGAGUUUACA C UCGUGA Aggu  g c
--     uugu  aac   a   a  ucc -      -  c    G          G G      A    ag g 

Annotation confidence High

Genome context

10: 23262993-23263133 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-372

Mature eca-miR-372-5p

• Accession: MIMAT0051543
• Description: Equus caballus eca-miR-372-5p mature miRNA
• Sequence: 42 - ACUCAAAUGUGGAAGCACUCUU - 63
• Evidence: experimental ; Illumina [1]

Mature eca-miR-372-3p

• Accession: MIMAT0034639
• Description: Equus caballus eca-miR-372-3p mature miRNA
• Sequence: 79 - AAAGUGCUGCGACAUUUGAGUGU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545