Stem-loop eca-mir-9094

Accession

MI0028268

Description

Equus caballus eca-mir-9094 precursor miRNA

Sequence

16 reads, 2 reads per million, 1 experiments

cguggaaaaagagcaggugacacggcaggagcaaagaccuggaggcagggugggcggguugagggucugugggcuuggccUCACCCGUGUCCUUUCUCUGCCUAGgaccuauacugccccuguaccccacccaagccaugggccc
(((((..........((((.....(((((.(((.((.(((..((((((((.((((((((.((((.((.........))))))))))))..))...)))))))))))..))....))).)))))....))))....))))).....

Structure

-----     aaaaagagca    acacg     a   ---a  -a   gg        --u  --      u    g  ugu 
     cgugg          ggug     gcagg gca    ag  ccu  aggcaggg   gg  gcgggu gagg uc   g
     |||||          ||||     ||||| |||    ||  |||  ||||||||   ||  |||||| |||| ||   g
     guacc          ccac     ugucc cgu    uc  gGA  UCCGUCUC   CC  UGCCCA CUcc gg   g
cccgg     ------gaac    -ccca     c   caua  ca   --        UUU  UG      -    -  uuc 

Annotation confidence Not enough data

Genome context

chr10: 15397801-15397945 [+]

Mature eca-miR-9094

• Accession: MIMAT0034640
• Description: Equus caballus eca-miR-9094 mature miRNA
• Sequence: 81 - UCACCCGUGUCCUUUCUCUGCCUAG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545