Stem-loop eca-mir-9104

Accession

MI0028281

Description

Equus caballus eca-mir-9104 precursor miRNA

Sequence

500 reads, 13.0 reads per million, 110 experiments

ggaggguagagagcuggugagggcagggaguggcugggcUCAGCAGGGCGGAGGGUCAGGAggugagcuuggcucugCUGACCUGAGGCCUCUGCUGCAggcccuacuucaccuacuggcugacuuuuguccacaucau
(((.((.((..(((((((..(((...(((((((..((.(((((((((((...(((((((.((((.......)).)).)))))))...))).)))))).)).))))))))).))))))))))..)).)).))).......

Structure

-------   g  u  ag       ga   cag       cu  g  -      -   GGA       G  -  ga 
       gga gg ag  agcuggu  ggg   ggagugg  gg cU CAGCAG GGC   GGGUCAG Ag gu  g
       ||| || ||  |||||||  |||   |||||||  || || |||||| |||   ||||||| || ||  c
       ccu uu uc  ucgguca  ucc   cuucauc  cc gA GUCGUC CCG   UCCAGUC uc cg  u
uacuaca   g  u  ag       --   --a       --  g  C      U   GAG       g  u  gu 

Annotation confidence High

Genome context

11: 5684801-5684939 [+]

Mature eca-miR-9104-5p

• Accession: MIMAT0051546
• Description: Equus caballus eca-miR-9104-5p mature miRNA
• Sequence: 40 - UCAGCAGGGCGGAGGGUCAGGA - 61
• Evidence: experimental ; Illumina [1]

Mature eca-miR-9104-3p

• Accession: MIMAT0034651
• Description: Equus caballus eca-miR-9104-3p mature miRNA
• Sequence: 78 - CUGACCUGAGGCCUCUGCUGCA - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545